Soybean VCF2Genomes
Notice
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Single sample vcf or vcf.gz is acceptable
Input vcf file should be created with soybean reference file:Gmax_275_v2.0.fa@https://phytozome.jgi.doe.gov/pz/portal.html
Job completion may take at least 5 min. Please be patient.
DB source
Default reference genotype matrix from the 222 soybean samples: http://koreansoyabase.org/
Candian accessions: http://dx.doi.org/10.1371/journal.pone.0131533
Test VCF file for cultivar "Baegun"
Select reference genotype matrix:
Defalut reference matrix from 222 soybean accessions
Defalut reference matrix + Canadian soybean accessions
Vcf file:
Accessions in same color
Distance
Complete linkage tree among accessions and query
